Dr Carly Daniels – Research and Development Manager

Carly, the Research and Development manager for the NLH, has over 13 years’ experience in the field. Carly pursued a career in Marine Biology from an early age, with a natural interest in the marine environment and the protection of its fascinating array of life-forms. Carly first came to the NLH in 2004  to conduct her Plymouth University undergraduate project, which aimed to improve the health of cultured lobsters through feed supplementation.

This stimulated an interest in lobster conservation, which led to Carly working with the hatchery to improve hatchery production and practical research, and undertaking a PhD(also with Plymouth) into optimising the rearing diets in lobster culture, which she completed in 2011. Carly now runs the hatchery’s rapidly growing research sector, leading investigations into hatchery culture techniques, mariculture on-growing, development of lobster diets, and the behaviour, physiology, bacteriology, histology, immunology and genetics of wild and cultured lobsters.

Carly has developed expertise in funding and managing collaborative and interdisciplinary research projects which generate impact in fisheries conservation and the aquaculture industry. As the Hatchery’s senior researcher, Carly leads a team of marine scientists and placement students who develop and undertake a diverse array of the NLH research within defined research projects, and is the principle investigator on Lobster Grower 1 and 2, Europe’s largest lobster research project.

These projects, jointly funded by Innovate UK and BBSRC, could revolutionise the impact of hatchery enhancement of wild lobster fisheries, as well as spearhead the development of a novel aquaculture sector. Carly has established the Hatchery’s reputation for lobster research on an international stage via the publication of 13 peer-reviewed scientific articles, and aspires to continue driving the charity’s growing contribution to marine conservation science.

Interests and expertise:

  • Sustainable fisheries and aquaculture
  • Stock enhancement
  • Ecological conditioning in cultured animals
  • Biotic supplementation
  • Dietary development
  • Alternative methods of sustainable aquaculture
  • Multispecies aquaculture

Publications:
Halswell P, Daniels CL, Hardwick, J., Johanning L. Evaluation framework for external and internal parameters associated with Sea Based Container Culture (SBCC): Towards understanding rearing success in European lobsters (Homarus gammarus). Submitted to Aquaculture in November 2017 in review.

Ellis CD, Hodgson DJ, Daniels CL, Collins M, Griffiths AGF. (2017) Population genetic structure in European lobsters: implications for connectivity, diversity and hatchery stocking. Marine Ecology Progress Series. 563; 123–137 Full text

Halswell P, Daniels CL, Johanning L. (2016) Sea-based container culture (SBCC) hydrodynamic design assessment for European lobsters (Homarus gammarus). Aquacultural Engineering. 74; 157-173. Full text

Daniels CL, Wills B, Ruiz-Perez M, Miles E, Wilson RW, Boothroyd D. (2015) Development of sea based container culture for rearing European lobster (Homarus gammarus) around South West England. Aquaculture. 448; 186-195. Full text

Ellis CD, Hodgson DJ, Daniels CL, Boothroyd DP, Bannister RCA, Griffiths AGF. (2015) European lobster stocking requires comprehensive impact assessment to determine fishery benefits. ICES Journal of Marine Science. 72 (S1); i35-i48. Full text

Ellis CD, Knott H, Daniels CL, Witt MJ, Hodgson DJ. (2015) Geographic and environmental drivers of fecundity in the European lobster (Homarus gammarus). ICES Journal of Marine Science.72 (S1); i91-i100. Full text

Middlemiss KL, Daniels CL, Urbina MA, Wilson RW. (2015) Combined effects of UV irradiation, ozonation, and the probiotic Bacillus spp. on growth, survival, and general fitness in European lobster (Homarus gammarus). Aquaculture. 444, 99-107. Full text

Castex M, Daniels CL, Chim L. (2014) Probiotic Applications in Crustaceans. In: Aquaculture Nutrition: Gut Health, Probiotics and Prebiotics. Editors: Merrifield DL, Ringø E. Wiley Blackwell. pp 290-327.

Daniels CL, Hoseinifar SH. (2014) Prebiotic Applications in Shellfish. In: Aquaculture Nutrition: Gut Health, Probiotics and Prebiotics. Editors: Merrifield DL, Ringø E. Wiley Blackwell. pp 401-418.

Merrifield DL, Balcazar JL, Daniels CL, Zhou Z, Carnevali O, Yun-Zhang S, et al. (2014) Indigenous Lactic Acid Bacteria in Fish and Crustaceans. In: Aquaculture Nutrition: Gut Health, Probiotics and Prebiotics. Editors: Merrifield DL, Ringø E. Wiley Blackwell. pp 128-168

Daniels CL, Merrifield DL, Ringø E, Davies SJ. (2013) Probiotic, prebiotic and synbiotic applications for the improvement of larval European lobster (Homarus gammarus) culture. Aquaculture. 416; 396-406. Full text

Dimitroglou A, Merrifield DL, Güroy D, Carnevali O, Avella M, Picchietti S, Daniels CL, Davies SJ. (2011) Microbial manipulations to improve fish health and production – a Mediterranean perspective. Fish and Shellfish Immunology. 30; 1-16.

Daniels CL, Merrifield DL, Boothroyd DP, Davies SJ, Factor JR, Arnold KE. (2010) Effect of dietary Bacillus spp. and mannan oligosaccharides (MOS) on European lobster (Homarus gammarus L.) larvae growth performance, gut morphology and gut microbiota. Aquaculture. 304, 49-57.

Arnold KE, Findlay HS, Spicer JI, Daniels CL, Boothroyd D. (2009) Effect of CO2-related acidification on aspects of the larval development of the European lobster, Homarus gammarus (L.). Biogeosciences. 6 (8); 1747-1754. Full text

Holt C, Foster R, Daniels CL, Van Der Giezen M, Feist SW, Stentiford GD, & Bass D. (2018) Halioticida noduliformans infection in eggs of lobster (Homarus gammarus) reveals its generalistic parasitic strategy in marine invertebrates. Journal of Invertebrate Pathology. 154: 109–116.
Full text Abstract

A parasite exhibiting Oomycete-like morphology and pathogenesis was isolated from discoloured eggs of the European lobster (Homarus gammarus) and later found in gill tissues of adults. Group-specific Oomycete primers were designed to amplify the 18S ribosomal small subunit (SSU), which initially identified the organism as the same as the ‘Haliphthoros’ sp. NJM 0034 strain (AB178865.1) previously isolated from abalone (imported from South Australia to Japan). However, in accordance with other published SSU-based phylogenies, the NJM 0034 isolate did not group with other known Haliphthoros species in our Maximum Likelihood and Bayesian phylogenies. Instead, the strain formed an orphan lineage, diverging before the separation of the Saprolegniales and Pythiales. Based upon 28S large subunit (LSU) phylogeny, our own isolate and the previously unidentified 0034 strain are both identical to the abalone pathogen Halioticida noduliformans. The genus shares morphological similarities with Haliphthoros and Halocrusticida and forms a clade with these in LSU phylogenies. Here, we confirm the first recorded occurrence of H. noduliformans in European lobsters and associate its presence with pathology of the egg mass, likely leading to reduced fecundity.

Daniels C, Ruiz-Perez M, Franks S, Schmidt W, Redshaw CH. Development and validation of a bioassay for assessing acute impacts on European Lobster (Homarus gammarus) larvae. (Manuscript in preparation.)
Abstract

The heavy reliance of agriculture on pesticides, to assure quality and maximal productivity can result in downstream pollution of aquatic environments. The subsequent effects on non-target organisms are established for certain species, but remain largely unknown. This pollution can be problematic for aquaculture, which relies heavily on the use of natural water sources. The present study sought to develop a species specific biological assay that could be used to determine the suitability of water sources for use in aquaculture. The bioassay developed herein represents a simple low-cost technique that could be used to evaluate potential toxicity of any water-borne compound on H. gammarus. Additionally, this bioassay also has direct practical applications for assessing the suitability of water sources for rearing H. gammarus under culture conditions.

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